Analysis of Ligand-Protein Contacts in PDB entry:
2D3S


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 35 ligands in PDB entry 2D3S. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 3
NAG
E
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
FUC
F
2 10ALPHA-L-FUCOPYRANOSE
lig 6
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
FUC
G
2 10ALPHA-L-FUCOPYRANOSE
lig 8
NAG
G
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
FUC
H
2 10ALPHA-L-FUCOPYRANOSE
lig 11
NAG
H
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
I
3 11BETA-D-MANNOPYRANOSE
lig 15
FUC
I
4 10ALPHA-L-FUCOPYRANOSE
lig 16
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
FUC
J
2 10ALPHA-L-FUCOPYRANOSE
lig 18
NAG
J
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
CA
A
506 1CALCIUM ION
lig 20
MN
A
507 1MANGANESE (II) ION
lig 21
SER
A
508 7SERINE
lig 22
A2G
A
509 142-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOS
lig 23
CA
B
507 1CALCIUM ION
lig 24
MN
B
508 1MANGANESE (II) ION
lig 25
SER
B
509 7SERINE
lig 26
A2G
B
510 142-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOS
lig 27
NAG
C
505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
CA
C
506 1CALCIUM ION
lig 29
MN
C
507 1MANGANESE (II) ION
lig 30
SER
C
508 7SERINE
lig 31
A2G
C
509 142-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOS
lig 32
CA
D
604 1CALCIUM ION
lig 33
MN
D
605 1MANGANESE (II) ION
lig 34
SER
D
606 7SERINE
lig 35
A2G
D
607 142-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOS