Analysis of Ligand-Protein Contacts in PDB entry:
2DLC


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 12 ligands in PDB entry 2DLC. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MG
Y
510 232N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
OMG
Y
518 23O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 3
M2G
Y
526 23N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 4
PSU
Y
535 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 5
6IA
Y
537 22N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE
lig 6
PSU
Y
539 12PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 7
5MC
Y
548 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 8
5MU
Y
554 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 9
PSU
Y
555 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 10
1MA
Y
558 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 11
MG
X
801 1MAGNESIUM ION
lig 12
YMP
X
601 35O-(ADENOSINE-5'-O-YL)-N-(L-TYROSYL)PHOSPHO