Analysis of Ligand-Protein Contacts in PDB entry:
2DVD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 2DVD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GAL
E
1 12BETA-D-GALACTOPYRANOSE
lig 2
GAL
E
2 11BETA-D-GALACTOPYRANOSE
lig 3
GAL
F
1 12BETA-D-GALACTOPYRANOSE
lig 4
GAL
F
2 11BETA-D-GALACTOPYRANOSE
lig 5
GAL
G
1 12BETA-D-GALACTOPYRANOSE
lig 6
GAL
G
2 11BETA-D-GALACTOPYRANOSE
lig 7
GAL
H
1 12BETA-D-GALACTOPYRANOSE
lig 8
GAL
H
2 11BETA-D-GALACTOPYRANOSE
lig 9
CA
A
237 1CALCIUM ION
lig 10
MN
A
238 1MANGANESE (II) ION
lig 11
SO4
A
1241 5SULFATE ION
lig 12
CA
B
237 1CALCIUM ION
lig 13
MN
B
238 1MANGANESE (II) ION
lig 14
SO4
B
2241 5SULFATE ION
lig 15
CA
C
237 1CALCIUM ION
lig 16
MN
C
238 1MANGANESE (II) ION
lig 17
SO4
C
3241 5SULFATE ION
lig 18
CA
D
237 1CALCIUM ION
lig 19
MN
D
238 1MANGANESE (II) ION
lig 20
SO4
D
4241 5SULFATE ION