Analysis of Ligand-Protein Contacts in PDB entry:
2GDI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 17 ligands in PDB entry 2GDI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GTP
X
10 28GUANOSINE-5'-TRIPHOSPHATE
lig 2
CCC
X
89 23CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHA
lig 3
GTP
Y
10 32GUANOSINE-5'-TRIPHOSPHATE
lig 4
CCC
Y
89 23CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHA
lig 5
NA
X
121 1SODIUM ION
lig 6
NA
X
122 1SODIUM ION
lig 7
K
X
123 1POTASSIUM ION
lig 8
K
X
124 1POTASSIUM ION
lig 9
K
X
125 1POTASSIUM ION
lig 10
MG
X
101 1MAGNESIUM ION
lig 11
MG
X
102 1MAGNESIUM ION
lig 12
MG
X
103 1MAGNESIUM ION
lig 13
TPP
X
100 26THIAMINE DIPHOSPHATE
lig 14
MG
Y
111 1MAGNESIUM ION
lig 15
MG
Y
112 1MAGNESIUM ION
lig 16
MG
Y
113 1MAGNESIUM ION
lig 17
TPP
Y
100 26THIAMINE DIPHOSPHATE