Analysis of Ligand-Protein Contacts in PDB entry:
2GJM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 23 ligands in PDB entry 2GJM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 11
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 12
SCN
A
1502 3THIOCYANATE ION
lig 13
CO3
A
1001 4CARBONATE ION
lig 14
CA
A
1503 1CALCIUM ION
lig 15
IOD
A
2001 1IODIDE ION
lig 16
IOD
A
2002 1IODIDE ION
lig 17
IOD
A
2003 1IODIDE ION
lig 18
IOD
A
2004 1IODIDE ION
lig 19
IOD
A
2005 1IODIDE ION
lig 20
IOD
A
2006 1IODIDE ION
lig 21
IOD
A
2007 1IODIDE ION
lig 22
IOD
A
2008 1IODIDE ION
lig 23
HEM
A
605 43PROTOPORPHYRIN IX CONTAINING FE