Analysis of Ligand-Protein Contacts in PDB entry:
2HOD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 2HOD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HYP
M
2 84-HYDROXYPROLINE
lig 2
NH2
M
5 1AMINO GROUP
lig 3
HYP
N
2 84-HYDROXYPROLINE
lig 4
NH2
N
5 1AMINO GROUP
lig 5
HYP
O
2 84-HYDROXYPROLINE
lig 6
NH2
O
5 1AMINO GROUP
lig 7
HYP
P
2 84-HYDROXYPROLINE
lig 8
NH2
P
5 1AMINO GROUP
lig 9
HYP
Q
2 84-HYDROXYPROLINE
lig 10
NH2
Q
5 1AMINO GROUP
lig 11
HYP
R
2 84-HYDROXYPROLINE
lig 12
NH2
R
5 1AMINO GROUP
lig 13
HYP
S
2 84-HYDROXYPROLINE
lig 14
NH2
S
5 1AMINO GROUP
lig 15
HYP
T
2 84-HYDROXYPROLINE
lig 16
NH2
T
5 1AMINO GROUP
lig 17
NAG
B
470 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
CA
B
2 1CALCIUM ION
lig 19
CA
C
1 1CALCIUM ION
lig 20
NAG
E
470 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
CA
E
2 1CALCIUM ION
lig 22
CA
E
3 1CALCIUM ION
lig 23
CA
F
1 1CALCIUM ION
lig 24
NAG
H
470 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
CA
H
2 1CALCIUM ION
lig 26
CA
I
1 1CALCIUM ION
lig 27
NAG
K
470 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
CA
K
2 1CALCIUM ION
lig 29
CA
K
3 1CALCIUM ION
lig 30
CA
L
1 1CALCIUM ION