Analysis of Ligand-Protein Contacts in PDB entry:
2JDK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 2JDK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 3
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
FUC
F
2 10ALPHA-L-FUCOPYRANOSE
lig 5
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUC
G
2 10ALPHA-L-FUCOPYRANOSE
lig 7
FUC
A
1115 11ALPHA-L-FUCOPYRANOSE
lig 8
CA
A
1116 1CALCIUM ION
lig 9
CA
A
1117 1CALCIUM ION
lig 10
T45
B
1117 9METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXYLATE
lig 11
CA
B
1118 1CALCIUM ION
lig 12
CA
B
1119 1CALCIUM ION
lig 13
SO4
C
1115 5SULFATE ION
lig 14
CA
C
1116 1CALCIUM ION
lig 15
CA
C
1117 1CALCIUM ION
lig 16
T45
C
1120 9METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXYLATE
lig 17
T45
D
1117 9METHYL 2H-1,2,3-TRIAZOLE-4-CARBOXYLATE
lig 18
CA
D
1118 1CALCIUM ION
lig 19
CA
D
1119 1CALCIUM ION