Analysis of Ligand-Protein Contacts in PDB entry:
2QRB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 25 ligands in PDB entry 2QRB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
CA
A
607 1CALCIUM ION
lig 13
CL
A
608 1CHLORIDE ION
lig 14
CL
A
609 1CHLORIDE ION
lig 15
CL
A
610 1CHLORIDE ION
lig 16
CL
A
606 1CHLORIDE ION
lig 17
CL
A
611 1CHLORIDE ION
lig 18
CL
A
612 1CHLORIDE ION
lig 19
CL
A
613 1CHLORIDE ION
lig 20
CL
A
614 1CHLORIDE ION
lig 21
CL
A
615 1CHLORIDE ION
lig 22
CL
A
616 1CHLORIDE ION
lig 23
CL
A
617 1CHLORIDE ION
lig 24
SCN
A
618 3THIOCYANATE ION
lig 25
HEM
A
619 43PROTOPORPHYRIN IX CONTAINING FE