Analysis of Ligand-Protein Contacts in PDB entry:
2VD3


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 29 ligands in PDB entry 2VD3. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
HIS
A
1290 11HISTIDINE
lig 2
CL
A
1007 1CHLORIDE ION
lig 3
IMD
A
1288 5IMIDAZOLE
lig 4
IMD
A
1289 5IMIDAZOLE
lig 5
CL
A
1291 1CHLORIDE ION
lig 6
CL
A
1292 1CHLORIDE ION
lig 7
CL
A
1293 1CHLORIDE ION
lig 8
MG
A
1294 1MAGNESIUM ION
lig 9
MG
A
1295 1MAGNESIUM ION
lig 10
MG
A
1296 1MAGNESIUM ION
lig 11
MG
A
1297 1MAGNESIUM ION
lig 12
MPD
A
1298 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 13
MRD
A
1299 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 14
MPD
A
1300 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 15
HIS
B
1300 11HISTIDINE
lig 16
CL
B
1009 1CHLORIDE ION
lig 17
MG
B
1118 1MAGNESIUM ION
lig 18
IMD
B
1288 5IMIDAZOLE
lig 19
CL
B
1289 1CHLORIDE ION
lig 20
CL
B
1290 1CHLORIDE ION
lig 21
CL
B
1291 1CHLORIDE ION
lig 22
CL
B
1292 1CHLORIDE ION
lig 23
MG
B
1293 1MAGNESIUM ION
lig 24
MG
B
1294 1MAGNESIUM ION
lig 25
MG
B
1295 1MAGNESIUM ION
lig 26
MG
B
1296 1MAGNESIUM ION
lig 27
MPD
B
1297 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 28
MPD
B
1298 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 29
MPD
B
1299 8(4S)-2-METHYL-2,4-PENTANEDIOL