Analysis of Ligand-Protein Contacts in PDB entry:
2VD8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 45 ligands in PDB entry 2VD8. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MLY
A
27 11N-DIMETHYL-LYSINE
lig 2
MLY
A
54 11N-DIMETHYL-LYSINE
lig 3
MLY
A
110 11N-DIMETHYL-LYSINE
lig 4
MLY
A
118 11N-DIMETHYL-LYSINE
lig 5
MLY
A
127 11N-DIMETHYL-LYSINE
lig 6
MLY
A
145 11N-DIMETHYL-LYSINE
lig 7
MLY
A
148 11N-DIMETHYL-LYSINE
lig 8
MLY
A
152 11N-DIMETHYL-LYSINE
lig 9
MLY
A
182 11N-DIMETHYL-LYSINE
lig 10
MLY
A
195 11N-DIMETHYL-LYSINE
lig 11
MLY
A
202 11N-DIMETHYL-LYSINE
lig 12
MLY
A
245 11N-DIMETHYL-LYSINE
lig 13
MLY
A
255 11N-DIMETHYL-LYSINE
lig 14
MLY
A
264 11N-DIMETHYL-LYSINE
lig 15
MLY
A
277 11N-DIMETHYL-LYSINE
lig 16
MLY
A
307 11N-DIMETHYL-LYSINE
lig 17
MLY
A
333 11N-DIMETHYL-LYSINE
lig 18
MLY
A
378 11N-DIMETHYL-LYSINE
lig 19
MLY
B
27 11N-DIMETHYL-LYSINE
lig 20
MLY
B
54 11N-DIMETHYL-LYSINE
lig 21
MLY
B
110 11N-DIMETHYL-LYSINE
lig 22
MLY
B
118 11N-DIMETHYL-LYSINE
lig 23
MLY
B
127 11N-DIMETHYL-LYSINE
lig 24
MLY
B
145 11N-DIMETHYL-LYSINE
lig 25
MLY
B
148 11N-DIMETHYL-LYSINE
lig 26
MLY
B
152 11N-DIMETHYL-LYSINE
lig 27
MLY
B
182 11N-DIMETHYL-LYSINE
lig 28
MLY
B
195 11N-DIMETHYL-LYSINE
lig 29
MLY
B
202 11N-DIMETHYL-LYSINE
lig 30
MLY
B
245 11N-DIMETHYL-LYSINE
lig 31
MLY
B
255 11N-DIMETHYL-LYSINE
lig 32
MLY
B
264 11N-DIMETHYL-LYSINE
lig 33
MLY
B
277 11N-DIMETHYL-LYSINE
lig 34
MLY
B
307 11N-DIMETHYL-LYSINE
lig 35
MLY
B
333 11N-DIMETHYL-LYSINE
lig 36
MLY
B
378 11N-DIMETHYL-LYSINE
lig 37
PLP
A
1041 15PYRIDOXAL-5'-PHOSPHATE
lig 38
MG
A
1390 1MAGNESIUM ION
lig 39
CL
A
1391 1CHLORIDE ION
lig 40
CL
A
1392 1CHLORIDE ION
lig 41
MG
B
1001 1MAGNESIUM ION
lig 42
MG
B
1002 1MAGNESIUM ION
lig 43
MG
B
1003 1MAGNESIUM ION
lig 44
PLP
B
1041 15PYRIDOXAL-5'-PHOSPHATE
lig 45
CL
B
1390 1CHLORIDE ION