Analysis of Ligand-Protein Contacts in PDB entry:
2VDM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 2VDM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
C
5 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
D
4 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
D
5 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
D
6 11ALPHA-D-MANNOPYRANOSE
lig 12
MAN
D
7 11ALPHA-D-MANNOPYRANOSE
lig 13
GOL
A
1453 6GLYCEROL
lig 14
CA
A
2004 1CALCIUM ION
lig 15
CA
A
2005 1CALCIUM ION
lig 16
CA
A
2006 1CALCIUM ION
lig 17
CA
A
2007 1CALCIUM ION
lig 18
NAG
A
3015 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
A
3249 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
AGG
B
1462 30TIROFIBAN
lig 21
GOL
B
1463 6GLYCEROL
lig 22
MG
B
2001 1MAGNESIUM ION
lig 23
CA
B
2002 1CALCIUM ION
lig 24
CA
B
2003 1CALCIUM ION
lig 25
NAG
B
3099 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE