Analysis of Ligand-Protein Contacts in PDB entry:
2VKD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 8 ligands in PDB entry 2VKD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MN
A
1543 1MANGANESE (II) ION
lig 2
UPG
A
1544 36URIDINE-5'-DIPHOSPHATE-GLUCOSE
lig 3
MN
A
1551 1MANGANESE (II) ION
lig 4
MN
A
1552 1MANGANESE (II) ION
lig 5
MN
B
1541 1MANGANESE (II) ION
lig 6
UPG
B
1544 36URIDINE-5'-DIPHOSPHATE-GLUCOSE
lig 7
MN
C
1542 1MANGANESE (II) ION
lig 8
UPG
C
1544 36URIDINE-5'-DIPHOSPHATE-GLUCOSE