Analysis of Ligand-Protein Contacts in PDB entry:
2W08


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 20 ligands in PDB entry 2W08. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CA
A
205 1CALCIUM ION
lig 2
CA
A
206 1CALCIUM ION
lig 3
NAG
A
207 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
TPO
A
500 12PHOSPHOTHREONINE
lig 5
CA
B
205 1CALCIUM ION
lig 6
CA
B
206 1CALCIUM ION
lig 7
NAG
B
207 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
TPO
B
500 12PHOSPHOTHREONINE
lig 9
CA
C
205 1CALCIUM ION
lig 10
CA
C
206 1CALCIUM ION
lig 11
NAG
C
207 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
TPO
C
500 12PHOSPHOTHREONINE
lig 13
CA
D
205 1CALCIUM ION
lig 14
CA
D
206 1CALCIUM ION
lig 15
NAG
D
207 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
TPO
D
500 12PHOSPHOTHREONINE
lig 17
CA
E
205 1CALCIUM ION
lig 18
CA
E
206 1CALCIUM ION
lig 19
NAG
E
207 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
TPO
E
500 12PHOSPHOTHREONINE