Analysis of Ligand-Protein Contacts in PDB entry:
2YBB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 42 ligands in PDB entry 2YBB. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SF4
1
439 8IRON/SULFUR CLUSTER
lig 2
FMN
1
440 31FLAVIN MONONUCLEOTIDE
lig 3
NAI
1
441 441,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTI
lig 4
MG
1
442 1MAGNESIUM ION
lig 5
FES
2
182 4FE2/S2 (INORGANIC) CLUSTER
lig 6
MG
2
206 1MAGNESIUM ION
lig 7
SF4
3
784 8IRON/SULFUR CLUSTER
lig 8
SF4
3
785 8IRON/SULFUR CLUSTER
lig 9
SF4
3
786 8IRON/SULFUR CLUSTER
lig 10
FES
3
787 4FE2/S2 (INORGANIC) CLUSTER
lig 11
MG
3
788 1MAGNESIUM ION
lig 12
MG
3
789 1MAGNESIUM ION
lig 13
MG
4
410 1MAGNESIUM ION
lig 14
MG
5
208 1MAGNESIUM ION
lig 15
SF4
6
182 8IRON/SULFUR CLUSTER
lig 16
CA
7
204 1CALCIUM ION
lig 17
SF4
8
183 8IRON/SULFUR CLUSTER
lig 18
SF4
8
184 8IRON/SULFUR CLUSTER
lig 19
HEM
C
501 43PROTOPORPHYRIN IX CONTAINING FE
lig 20
HEM
C
502 43PROTOPORPHYRIN IX CONTAINING FE
lig 21
SMA
C
2001 37STIGMATELLIN A
lig 22
UQ1
C
2002 14UBIQUINONE-1
lig 23
HEC
D
501 43HEME C
lig 24
FES
E
501 4FE2/S2 (INORGANIC) CLUSTER
lig 25
CDL
G
2003 50CARDIOLIPIN
lig 26
CDL
G
2004 44CARDIOLIPIN
lig 27
HEA
L
515 60HEME-A
lig 28
HEA
L
516 60HEME-A
lig 29
CU
L
517 1COPPER (II) ION
lig 30
MG
L
518 1MAGNESIUM ION
lig 31
CU
M
228 1COPPER (II) ION
lig 32
CU
M
229 1COPPER (II) ION
lig 33
ZN
Q
99 1ZINC ION
lig 34
HEM
Y
500 43PROTOPORPHYRIN IX CONTAINING FE
lig 35
HEM
c
501 43PROTOPORPHYRIN IX CONTAINING FE
lig 36
HEM
c
502 43PROTOPORPHYRIN IX CONTAINING FE
lig 37
SMA
c
3001 37STIGMATELLIN A
lig 38
UQ1
c
3002 14UBIQUINONE-1
lig 39
HEC
d
501 43HEME C
lig 40
CDL
d
3003 50CARDIOLIPIN
lig 41
FES
e
501 4FE2/S2 (INORGANIC) CLUSTER
lig 42
CDL
g
3004 49CARDIOLIPIN