Analysis of Ligand-Protein Contacts in PDB entry:
2YL9


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 62 ligands in PDB entry 2YL9. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
BMA
E
2 11BETA-D-MANNOPYRANOSE
lig 3
MAN
E
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
E
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
F
2 11BETA-D-MANNOPYRANOSE
lig 7
MAN
F
3 11ALPHA-D-MANNOPYRANOSE
lig 8
NAG
F
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
G
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
BMA
G
2 11BETA-D-MANNOPYRANOSE
lig 11
MAN
G
3 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
G
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
1 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
H
2 11BETA-D-MANNOPYRANOSE
lig 15
MAN
H
3 11ALPHA-D-MANNOPYRANOSE
lig 16
NAG
H
4 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
EDO
A
1105 41,2-ETHANEDIOL
lig 18
EDO
A
1106 41,2-ETHANEDIOL
lig 19
EDO
A
1107 41,2-ETHANEDIOL
lig 20
EDO
A
1108 41,2-ETHANEDIOL
lig 21
EDO
A
1109 41,2-ETHANEDIOL
lig 22
EDO
A
1110 41,2-ETHANEDIOL
lig 23
EDO
A
1111 41,2-ETHANEDIOL
lig 24
EDO
A
1112 11,2-ETHANEDIOL
lig 25
EDO
A
1113 41,2-ETHANEDIOL
lig 26
EDO
A
1114 41,2-ETHANEDIOL
lig 27
EDO
A
1115 41,2-ETHANEDIOL
lig 28
EDO
A
1116 41,2-ETHANEDIOL
lig 29
EDO
A
1117 41,2-ETHANEDIOL
lig 30
EDO
A
1118 41,2-ETHANEDIOL
lig 31
EDO
A
1119 41,2-ETHANEDIOL
lig 32
EDO
A
1120 41,2-ETHANEDIOL
lig 33
EDO
B
1105 41,2-ETHANEDIOL
lig 34
EDO
B
1106 41,2-ETHANEDIOL
lig 35
EDO
B
1107 41,2-ETHANEDIOL
lig 36
EDO
B
1108 41,2-ETHANEDIOL
lig 37
EDO
B
1109 41,2-ETHANEDIOL
lig 38
EDO
B
1110 41,2-ETHANEDIOL
lig 39
EDO
B
1111 41,2-ETHANEDIOL
lig 40
EDO
B
1112 41,2-ETHANEDIOL
lig 41
EDO
C
1105 41,2-ETHANEDIOL
lig 42
EDO
C
1106 41,2-ETHANEDIOL
lig 43
EDO
C
1107 41,2-ETHANEDIOL
lig 44
EDO
C
1108 41,2-ETHANEDIOL
lig 45
EDO
C
1109 41,2-ETHANEDIOL
lig 46
EDO
C
1110 41,2-ETHANEDIOL
lig 47
EDO
C
1111 41,2-ETHANEDIOL
lig 48
EDO
D
1101 41,2-ETHANEDIOL
lig 49
EDO
D
1106 41,2-ETHANEDIOL
lig 50
EDO
D
1107 41,2-ETHANEDIOL
lig 51
EDO
D
1108 41,2-ETHANEDIOL
lig 52
EDO
D
1109 41,2-ETHANEDIOL
lig 53
EDO
D
1110 41,2-ETHANEDIOL
lig 54
EDO
D
1111 41,2-ETHANEDIOL
lig 55
EDO
D
1112 41,2-ETHANEDIOL
lig 56
EDO
D
1113 41,2-ETHANEDIOL
lig 57
EDO
D
1114 41,2-ETHANEDIOL
lig 58
EDO
D
1115 41,2-ETHANEDIOL
lig 59
EDO
D
1116 41,2-ETHANEDIOL
lig 60
EDO
D
1117 41,2-ETHANEDIOL
lig 61
EDO
D
1118 41,2-ETHANEDIOL
lig 62
EDO
D
1119 41,2-ETHANEDIOL