Analysis of Ligand-Protein Contacts in PDB entry:
2YMW


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 79 ligands in PDB entry 2YMW. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
TRQ
A
581 16 PROPIONIC ACID
lig 2
TRQ
B
581 16 PROPIONIC ACID
lig 3
NA
A
1687 1SODIUM ION
lig 4
NA
A
1688 1SODIUM ION
lig 5
EOH
A
1689 3ETHANOL
lig 6
EOH
A
1690 3ETHANOL
lig 7
EOH
A
1691 3ETHANOL
lig 8
EOH
A
1692 3ETHANOL
lig 9
EOH
A
1693 3ETHANOL
lig 10
EOH
A
1694 3ETHANOL
lig 11
EOH
A
1695 3ETHANOL
lig 12
EOH
A
1696 3ETHANOL
lig 13
EOH
A
1697 3ETHANOL
lig 14
EOH
A
1698 3ETHANOL
lig 15
EOH
A
1699 3ETHANOL
lig 16
EOH
A
1700 3ETHANOL
lig 17
EOH
A
1701 3ETHANOL
lig 18
EOH
A
1702 3ETHANOL
lig 19
EOH
A
1703 3ETHANOL
lig 20
EOH
A
1704 3ETHANOL
lig 21
EOH
A
1705 3ETHANOL
lig 22
EOH
A
1706 3ETHANOL
lig 23
EOH
A
1707 3ETHANOL
lig 24
EOH
A
1708 3ETHANOL
lig 25
EOH
A
1709 3ETHANOL
lig 26
EOH
A
1710 3ETHANOL
lig 27
EOH
A
1711 3ETHANOL
lig 28
EOH
A
1712 3ETHANOL
lig 29
EOH
A
1713 3ETHANOL
lig 30
EOH
A
1714 3ETHANOL
lig 31
EOH
A
1715 3ETHANOL
lig 32
EOH
A
1716 3ETHANOL
lig 33
EOH
A
1717 3ETHANOL
lig 34
EOH
A
1718 3ETHANOL
lig 35
EOH
A
1719 3ETHANOL
lig 36
EOH
A
1720 3ETHANOL
lig 37
EOH
A
1721 3ETHANOL
lig 38
EOH
A
1722 3ETHANOL
lig 39
EOH
A
1723 3ETHANOL
lig 40
EOH
A
1724 3ETHANOL
lig 41
EOH
A
1725 3ETHANOL
lig 42
EOH
A
1726 3ETHANOL
lig 43
EOH
A
1727 3ETHANOL
lig 44
EOH
A
1800 3ETHANOL
lig 45
EOH
A
1801 3ETHANOL
lig 46
EOH
A
1802 3ETHANOL
lig 47
EOH
A
1803 3ETHANOL
lig 48
NA
B
1687 1SODIUM ION
lig 49
NA
B
1688 1SODIUM ION
lig 50
EOH
B
1689 3ETHANOL
lig 51
EOH
B
1690 3ETHANOL
lig 52
EOH
B
1691 3ETHANOL
lig 53
EOH
B
1692 3ETHANOL
lig 54
EOH
B
1693 3ETHANOL
lig 55
EOH
B
1694 3ETHANOL
lig 56
EOH
B
1695 3ETHANOL
lig 57
EOH
B
1696 3ETHANOL
lig 58
EOH
B
1697 3ETHANOL
lig 59
EOH
B
1698 3ETHANOL
lig 60
EOH
B
1699 3ETHANOL
lig 61
EOH
B
1700 3ETHANOL
lig 62
EOH
B
1701 3ETHANOL
lig 63
EOH
B
1702 3ETHANOL
lig 64
EOH
B
1703 3ETHANOL
lig 65
EOH
B
1704 3ETHANOL
lig 66
EOH
B
1705 3ETHANOL
lig 67
EOH
B
1706 3ETHANOL
lig 68
EOH
B
1707 3ETHANOL
lig 69
EOH
B
1708 3ETHANOL
lig 70
EOH
B
1709 3ETHANOL
lig 71
EOH
B
1710 3ETHANOL
lig 72
EOH
B
1711 3ETHANOL
lig 73
EOH
B
1712 3ETHANOL
lig 74
EOH
B
1713 3ETHANOL
lig 75
GOL
B
1714 6GLYCEROL
lig 76
GOL
B
1715 6GLYCEROL
lig 77
EOH
B
1800 3ETHANOL
lig 78
EOH
B
1801 3ETHANOL
lig 79
EOH
B
1802 3ETHANOL