Analysis of Ligand-Protein Contacts in PDB entry:
2YOR


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 51 ligands in PDB entry 2YOR. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
D
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
D
4 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
D
5 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 12
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 17
MAN
F
6 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
F
7 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
F
8 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 28
HEM
A
350 43PROTOPORPHYRIN IX CONTAINING FE
lig 29
MG
A
353 1MAGNESIUM ION
lig 30
MZ0
A
354 71H-IMIDAZOL-5-YLMETHANOL
lig 31
NAG
A
391 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
A
401 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
A
411 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
BMA
A
501 12BETA-D-MANNOPYRANOSE
lig 35
SO4
A
1355 5SULFATE ION
lig 36
CL
A
1356 1CHLORIDE ION
lig 37
SO4
A
1357 5SULFATE ION
lig 38
SO4
A
1358 5SULFATE ION
lig 39
HEM
B
350 43PROTOPORPHYRIN IX CONTAINING FE
lig 40
MG
B
353 1MAGNESIUM ION
lig 41
MZ0
B
354 71H-IMIDAZOL-5-YLMETHANOL
lig 42
NAG
B
411 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
BMA
B
501 12BETA-D-MANNOPYRANOSE
lig 44
NAG
B
511 152-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
TRS
B
1355 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 46
CL
B
1356 1CHLORIDE ION
lig 47
SO4
B
1357 5SULFATE ION
lig 48
CL
B
1358 1CHLORIDE ION
lig 49
SO4
B
1359 5SULFATE ION
lig 50
SO4
B
1360 5SULFATE ION
lig 51
CL
B
1361 1CHLORIDE ION