Analysis of Ligand-Protein Contacts in PDB entry:
2YP1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 86 ligands in PDB entry 2YP1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
E
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 10
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 17
MAN
H
4 11ALPHA-D-MANNOPYRANOSE
lig 18
MAN
H
5 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
H
6 11ALPHA-D-MANNOPYRANOSE
lig 20
MAN
H
7 11ALPHA-D-MANNOPYRANOSE
lig 21
MAN
H
8 11ALPHA-D-MANNOPYRANOSE
lig 22
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
BMA
J
3 11BETA-D-MANNOPYRANOSE
lig 27
MAN
J
4 11ALPHA-D-MANNOPYRANOSE
lig 28
MAN
J
5 11ALPHA-D-MANNOPYRANOSE
lig 29
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 32
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 34
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 36
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 37
MAN
M
5 11ALPHA-D-MANNOPYRANOSE
lig 38
MAN
M
6 11ALPHA-D-MANNOPYRANOSE
lig 39
MAN
M
7 11ALPHA-D-MANNOPYRANOSE
lig 40
MAN
M
8 11ALPHA-D-MANNOPYRANOSE
lig 41
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
NAG
N
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 44
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 45
BMA
O
3 11BETA-D-MANNOPYRANOSE
lig 46
NAG
P
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
NAG
P
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 48
NAG
Q
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 49
NAG
Q
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 50
NAG
R
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 51
NAG
R
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 52
NAG
S
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 53
NAG
S
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 54
NAG
T
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 55
NAG
T
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 56
BMA
T
3 11BETA-D-MANNOPYRANOSE
lig 57
HEM
A
350 43PROTOPORPHYRIN IX CONTAINING FE
lig 58
MG
A
353 1MAGNESIUM ION
lig 59
ACT
A
1327 4ACETATE ION
lig 60
SO4
A
1328 5SULFATE ION
lig 61
SO4
A
1329 5SULFATE ION
lig 62
SO4
A
1330 5SULFATE ION
lig 63
SO4
A
1331 5SULFATE ION
lig 64
HEM
B
350 43PROTOPORPHYRIN IX CONTAINING FE
lig 65
MG
B
353 1MAGNESIUM ION
lig 66
ACT
B
1328 4ACETATE ION
lig 67
SO4
B
1329 5SULFATE ION
lig 68
SO4
B
1330 5SULFATE ION
lig 69
SO4
B
1331 5SULFATE ION
lig 70
HEM
C
350 43PROTOPORPHYRIN IX CONTAINING FE
lig 71
MG
C
353 1MAGNESIUM ION
lig 72
NAG
C
381 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 73
ACT
C
1329 4ACETATE ION
lig 74
SO4
C
1330 5SULFATE ION
lig 75
SO4
C
1331 5SULFATE ION
lig 76
SO4
C
1332 5SULFATE ION
lig 77
SO4
C
1333 5SULFATE ION
lig 78
ACT
C
1334 4ACETATE ION
lig 79
HEM
D
350 43PROTOPORPHYRIN IX CONTAINING FE
lig 80
MG
D
353 1MAGNESIUM ION
lig 81
NAG
D
381 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 82
NAG
D
391 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 83
NAG
D
411 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 84
ACT
D
1327 4ACETATE ION
lig 85
SO4
D
1328 5SULFATE ION
lig 86
SO4
D
1329 5SULFATE ION