Analysis of Ligand-Protein Contacts in PDB entry:
2YP4


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 16 ligands in PDB entry 2YP4. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 4
BGC
C
1 12BETA-D-GLUCOPYRANOSE
lig 5
GAL
C
2 11BETA-D-GALACTOPYRANOSE
lig 6
NAG
C
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
GAL
C
4 11BETA-D-GALACTOPYRANOSE
lig 8
SIA
C
5 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 9
NAG
A
1504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
A
1505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
A
1506 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
A
1508 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
A
1509 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
EPE
A
1512 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 15
EPE
A
1513 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 16
TAM
A
1519 11TRIS(HYDROXYETHYL)AMINOMETHANE