Analysis of Ligand-Protein Contacts in PDB entry:
3DGV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 46 ligands in PDB entry 3DGV. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NDG
D
2 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 3
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
FUL
E
2 10BETA-L-FUCOPYRANOSE
lig 5
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
FUL
G
3 10BETA-L-FUCOPYRANOSE
lig 10
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 13
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
NDG
I
2 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 15
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
ZN
A
318 1ZINC ION
lig 18
SO4
A
319 5SULFATE ION
lig 19
SO4
A
320 5SULFATE ION
lig 20
SO4
A
321 5SULFATE ION
lig 21
SO4
A
322 5SULFATE ION
lig 22
SO4
A
323 5SULFATE ION
lig 23
SO4
A
324 5SULFATE ION
lig 24
SO4
A
325 5SULFATE ION
lig 25
SO4
A
326 5SULFATE ION
lig 26
SO4
A
327 5SULFATE ION
lig 27
MLI
A
328 7MALONATE ION
lig 28
NAG
B
316 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
ZN
B
317 1ZINC ION
lig 30
SO4
B
318 5SULFATE ION
lig 31
SO4
B
319 5SULFATE ION
lig 32
SO4
B
320 5SULFATE ION
lig 33
SO4
B
321 5SULFATE ION
lig 34
SO4
B
322 5SULFATE ION
lig 35
SO4
B
323 5SULFATE ION
lig 36
SO4
B
324 5SULFATE ION
lig 37
SO4
B
325 5SULFATE ION
lig 38
SO4
B
326 5SULFATE ION
lig 39
SO4
B
327 5SULFATE ION
lig 40
SO4
B
328 5SULFATE ION
lig 41
MLI
B
329 7MALONATE ION
lig 42
NAG
C
309 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 43
ZN
C
310 1ZINC ION
lig 44
SO4
C
311 5SULFATE ION
lig 45
SO4
C
312 5SULFATE ION
lig 46
MLI
C
313 7MALONATE ION