Analysis of Ligand-Protein Contacts in PDB entry:
3GCJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 23 ligands in PDB entry 3GCJ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 10
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
HEM
A
605 43PROTOPORPHYRIN IX CONTAINING FE
lig 13
CA
A
606 1CALCIUM ION
lig 14
IOD
A
607 1IODIDE ION
lig 15
IOD
A
608 1IODIDE ION
lig 16
IOD
A
609 1IODIDE ION
lig 17
IOD
A
610 1IODIDE ION
lig 18
IOD
A
611 1IODIDE ION
lig 19
IOD
A
612 1IODIDE ION
lig 20
IOD
A
613 1IODIDE ION
lig 21
IOD
A
614 1IODIDE ION
lig 22
SCN
A
615 3THIOCYANATE ION
lig 23
SHA
A
617 11SALICYLHYDROXAMIC ACID