Analysis of Ligand-Protein Contacts in PDB entry:
3GDP


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 3GDP. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 4
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 5
FUL
C
5 10BETA-L-FUCOPYRANOSE
lig 6
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
FUC
D
2 10ALPHA-L-FUCOPYRANOSE
lig 8
NAG
D
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 12
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 13
FUC
E
5 10ALPHA-L-FUCOPYRANOSE
lig 14
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 15
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 17
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 18
IPA
A
522 4ISOPROPYL ALCOHOL
lig 19
FAD
A
523 53FLAVIN-ADENINE DINUCLEOTIDE
lig 20
NAG
A
524 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
A
533 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
IPA
B
522 4ISOPROPYL ALCOHOL
lig 23
FAD
B
523 53FLAVIN-ADENINE DINUCLEOTIDE
lig 24
NDG
B
533 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 25
NAG
B
534 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE