Analysis of Ligand-Protein Contacts in PDB entry:
3GMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 3GMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NDP
A
300 48 PHOSPHATE
lig 2
2M3
A
2 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 3
NDP
B
300 48 PHOSPHATE
lig 4
SO4
B
2 5SULFATE ION
lig 5
2M3
B
1 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 6
NDP
C
300 48 PHOSPHATE
lig 7
SO4
C
7 5SULFATE ION
lig 8
SO4
C
8 5SULFATE ION
lig 9
2M3
C
4 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 10
NDP
D
300 48 PHOSPHATE
lig 11
SO4
D
1 5SULFATE ION
lig 12
2M3
D
3 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 13
NDP
E
300 48 PHOSPHATE
lig 14
SO4
E
4 5SULFATE ION
lig 15
2M3
E
7 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 16
NDP
F
300 48 PHOSPHATE
lig 17
SO4
F
5 5SULFATE ION
lig 18
2M3
F
290 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 19
NDP
G
300 48 PHOSPHATE
lig 20
SO4
G
9 5SULFATE ION
lig 21
2M3
G
8 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-
lig 22
NDP
H
300 48 PHOSPHATE
lig 23
SO4
H
3 5SULFATE ION
lig 24
SO4
H
6 5SULFATE ION
lig 25
2M3
H
290 26 CARBONYL]PYRROLIDIN-3-YL}-1H-PYRROLO[2,3-