Analysis of Ligand-Protein Contacts in PDB entry:
3HDL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 58 ligands in PDB entry 3HDL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 4
MAN
B
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
B
5 11ALPHA-D-MANNOPYRANOSE
lig 6
XYZ
B
6 9BETA-D-XYLOFURANOSE
lig 7
FUC
B
7 10ALPHA-L-FUCOPYRANOSE
lig 8
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 12
FUC
C
5 10ALPHA-L-FUCOPYRANOSE
lig 13
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
FUC
D
2 10ALPHA-L-FUCOPYRANOSE
lig 15
NAG
D
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 18
NAG
E
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
MAN
G
3 11ALPHA-D-MANNOPYRANOSE
lig 24
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 25
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 26
FUC
G
6 10ALPHA-L-FUCOPYRANOSE
lig 27
HEM
A
305 43PROTOPORPHYRIN IX CONTAINING FE
lig 28
CA
A
306 1CALCIUM ION
lig 29
CA
A
307 1CALCIUM ION
lig 30
PEO
A
309 2HYDROGEN PEROXIDE
lig 31
SO4
A
311 5SULFATE ION
lig 32
SO4
A
312 5SULFATE ION
lig 33
SO4
A
313 5SULFATE ION
lig 34
SO4
A
314 5SULFATE ION
lig 35
SO4
A
315 5SULFATE ION
lig 36
SO4
A
316 5SULFATE ION
lig 37
SO4
A
317 5SULFATE ION
lig 38
SO4
A
318 5SULFATE ION
lig 39
MES
A
319 122-(N-MORPHOLINO)-ETHANESULFONIC ACID
lig 40
EDO
A
320 41,2-ETHANEDIOL
lig 41
EDO
A
321 41,2-ETHANEDIOL
lig 42
EDO
A
322 41,2-ETHANEDIOL
lig 43
EDO
A
323 41,2-ETHANEDIOL
lig 44
EDO
A
324 41,2-ETHANEDIOL
lig 45
EDO
A
326 41,2-ETHANEDIOL
lig 46
EDO
A
327 41,2-ETHANEDIOL
lig 47
EDO
A
328 41,2-ETHANEDIOL
lig 48
EDO
A
329 41,2-ETHANEDIOL
lig 49
EDO
A
330 41,2-ETHANEDIOL
lig 50
EDO
A
331 41,2-ETHANEDIOL
lig 51
EDO
A
332 41,2-ETHANEDIOL
lig 52
EDO
A
333 41,2-ETHANEDIOL
lig 53
EDO
A
334 41,2-ETHANEDIOL
lig 54
EDO
A
335 41,2-ETHANEDIOL
lig 55
EDO
A
336 41,2-ETHANEDIOL
lig 56
NAG
A
700 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 57
NAG
A
1100 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 58
NAG
A
1200 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE