Analysis of Ligand-Protein Contacts in PDB entry:
3MDL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 24 ligands in PDB entry 3MDL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 6
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
1AG
A
1 27 14-TETRAENOATE
lig 11
AKR
A
2 5ACRYLIC ACID
lig 12
AKR
A
3 5ACRYLIC ACID
lig 13
GOL
A
4 6GLYCEROL
lig 14
COH
A
614 43PROTOPORPHYRIN IX CONTAINING CO
lig 15
NAG
A
681 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
BOG
A
703 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 17
GOL
B
7 6GLYCEROL
lig 18
1AG
B
1 27 14-TETRAENOATE
lig 19
AKR
B
3 5ACRYLIC ACID
lig 20
AKR
B
4 5ACRYLIC ACID
lig 21
AKR
B
5 5ACRYLIC ACID
lig 22
GOL
B
6 6GLYCEROL
lig 23
COH
B
615 43PROTOPORPHYRIN IX CONTAINING CO
lig 24
NAG
B
681 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE