Analysis of Ligand-Protein Contacts in PDB entry:
3R55


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 34 ligands in PDB entry 3R55. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
A
601 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
602 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
HEM
A
603 43PROTOPORPHYRIN IX CONTAINING FE
lig 9
CA
A
604 1CALCIUM ION
lig 10
ZN
A
605 1ZINC ION
lig 11
IOD
A
606 1IODIDE ION
lig 12
IOD
A
607 1IODIDE ION
lig 13
IOD
A
608 1IODIDE ION
lig 14
IOD
A
609 1IODIDE ION
lig 15
IOD
A
610 1IODIDE ION
lig 16
IOD
A
611 1IODIDE ION
lig 17
IOD
A
612 1IODIDE ION
lig 18
IOD
A
613 1IODIDE ION
lig 19
IOD
A
614 1IODIDE ION
lig 20
IOD
A
615 1IODIDE ION
lig 21
IOD
A
616 1IODIDE ION
lig 22
IOD
A
617 1IODIDE ION
lig 23
SCN
A
618 3THIOCYANATE ION
lig 24
PZA
A
619 9PYRAZINE-2-CARBOXAMIDE
lig 25
PZA
A
620 9PYRAZINE-2-CARBOXAMIDE
lig 26
EDO
A
621 41,2-ETHANEDIOL
lig 27
EDO
A
622 41,2-ETHANEDIOL
lig 28
EDO
A
623 41,2-ETHANEDIOL
lig 29
EDO
A
624 41,2-ETHANEDIOL
lig 30
EDO
A
625 41,2-ETHANEDIOL
lig 31
GOL
A
626 6GLYCEROL
lig 32
GOL
A
627 6GLYCEROL
lig 33
MRD
A
628 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 34
PEG
A
629 7DI(HYDROXYETHYL)ETHER