Analysis of Ligand-Protein Contacts in PDB entry:
3RDK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 21 ligands in PDB entry 3RDK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
XYS
C
1 10ALPHA-D-XYLOPYRANOSE
lig 2
XYP
C
2 9BETA-D-XYLOPYRANOSE
lig 3
XYP
C
3 9BETA-D-XYLOPYRANOSE
lig 4
GCV
C
4 134-O-METHYL-ALPHA-D-GLUCOPYRANURONIC ACID
lig 5
XYS
D
1 10ALPHA-D-XYLOPYRANOSE
lig 6
XYP
D
2 9BETA-D-XYLOPYRANOSE
lig 7
XYP
D
3 9BETA-D-XYLOPYRANOSE
lig 8
GCV
D
4 134-O-METHYL-ALPHA-D-GLUCOPYRANURONIC ACID
lig 9
GOL
A
346 6GLYCEROL
lig 10
GOL
A
347 6GLYCEROL
lig 11
CL
A
348 1CHLORIDE ION
lig 12
GOL
A
349 6GLYCEROL
lig 13
CL
A
350 1CHLORIDE ION
lig 14
CL
A
351 1CHLORIDE ION
lig 15
GOL
A
352 6GLYCEROL
lig 16
GOL
A
353 6GLYCEROL
lig 17
MG
A
354 1MAGNESIUM ION
lig 18
GOL
B
346 6GLYCEROL
lig 19
GOL
B
347 6GLYCEROL
lig 20
GOL
B
348 6GLYCEROL
lig 21
GOL
B
349 6GLYCEROL