Analysis of Ligand-Protein Contacts in PDB entry:
3SDM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 21 ligands in PDB entry 3SDM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
840 10PHOSPHOSERINE
lig 2
SEP
A
841 10PHOSPHOSERINE
lig 3
TPO
A
844 11PHOSPHOTHREONINE
lig 4
SEP
B
840 10PHOSPHOSERINE
lig 5
SEP
B
841 10PHOSPHOSERINE
lig 6
TPO
B
844 11PHOSPHOTHREONINE
lig 7
SEP
C
840 10PHOSPHOSERINE
lig 8
SEP
C
841 10PHOSPHOSERINE
lig 9
TPO
C
844 11PHOSPHOTHREONINE
lig 10
SEP
D
840 10PHOSPHOSERINE
lig 11
SEP
D
841 10PHOSPHOSERINE
lig 12
TPO
D
844 11PHOSPHOTHREONINE
lig 13
SEP
E
840 10PHOSPHOSERINE
lig 14
SEP
E
841 10PHOSPHOSERINE
lig 15
TPO
E
844 11PHOSPHOTHREONINE
lig 16
SEP
F
840 10PHOSPHOSERINE
lig 17
SEP
F
841 10PHOSPHOSERINE
lig 18
TPO
F
844 11PHOSPHOTHREONINE
lig 19
SEP
G
840 10PHOSPHOSERINE
lig 20
SEP
G
841 10PHOSPHOSERINE
lig 21
TPO
G
844 11PHOSPHOTHREONINE