Analysis of Ligand-Protein Contacts in PDB entry:
3BKD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 22 ligands in PDB entry 3BKD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NH2
A
47 1AMINO GROUP
lig 2
NH2
B
47 1AMINO GROUP
lig 3
NH2
C
47 1AMINO GROUP
lig 4
NH2
D
47 1AMINO GROUP
lig 5
NH2
E
47 1AMINO GROUP
lig 6
NH2
F
47 1AMINO GROUP
lig 7
NH2
G
47 1AMINO GROUP
lig 8
NH2
H
47 1AMINO GROUP
lig 9
BOG
A
302 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 10
CL
A
101 1CHLORIDE ION
lig 11
PEG
A
401 7DI(HYDROXYETHYL)ETHER
lig 12
PEG
A
803 7DI(HYDROXYETHYL)ETHER
lig 13
BOG
B
301 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 14
PEG
B
402 7DI(HYDROXYETHYL)ETHER
lig 15
PEG
B
403 7DI(HYDROXYETHYL)ETHER
lig 16
BOG
C
303 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 17
BOG
E
702 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 18
CL
E
501 1CHLORIDE ION
lig 19
PEG
E
801 7DI(HYDROXYETHYL)ETHER
lig 20
PEG
E
802 7DI(HYDROXYETHYL)ETHER
lig 21
BOG
G
701 20OCTYL BETA-D-GLUCOPYRANOSIDE
lig 22
BOG
G
703 20OCTYL BETA-D-GLUCOPYRANOSIDE