Analysis of Ligand-Protein Contacts in PDB entry:
3DD1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 16 ligands in PDB entry 3DD1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
14 10PHOSPHOSERINE
lig 2
NBG
A
901 15N-ACETYL-BETA-D-GLUCOPYRANOSYLAMINE
lig 3
PLP
A
902 15PYRIDOXAL-5'-PHOSPHATE
lig 4
CFF
A
903 14CAFFEINE
lig 5
25D
A
905 37 CARBAMOYL]AMINO}NAPHTHALEN-2-YL)CARBONYL]
lig 6
MPD
A
906 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 7
MPD
A
907 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 8
MPD
A
908 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 9
NBG
B
901 15N-ACETYL-BETA-D-GLUCOPYRANOSYLAMINE
lig 10
PLP
B
902 15PYRIDOXAL-5'-PHOSPHATE
lig 11
CFF
B
903 14CAFFEINE
lig 12
MES
B
904 122-(N-MORPHOLINO)-ETHANESULFONIC ACID
lig 13
MES
B
905 122-(N-MORPHOLINO)-ETHANESULFONIC ACID
lig 14
25D
B
906 37 CARBAMOYL]AMINO}NAPHTHALEN-2-YL)CARBONYL]
lig 15
MPD
B
907 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 16
MPD
B
908 8(4S)-2-METHYL-2,4-PENTANEDIOL