Analysis of Ligand-Protein Contacts in PDB entry:
3DIY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 14 ligands in PDB entry 3DIY. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
GDP
A
1 28GUANOSINE-5'-DIPHOSPHATE
lig 2
CCC
A
174 23CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHA
lig 3
K
A
200 1POTASSIUM ION
lig 4
NA
A
201 1SODIUM ION
lig 5
NA
A
202 1SODIUM ION
lig 6
NA
A
203 1SODIUM ION
lig 7
NA
A
204 1SODIUM ION
lig 8
NA
A
205 1SODIUM ION
lig 9
NA
A
206 1SODIUM ION
lig 10
NA
A
207 1SODIUM ION
lig 11
NA
A
208 1SODIUM ION
lig 12
MN
A
250 1MANGANESE (II) ION
lig 13
MN
A
251 1MANGANESE (II) ION
lig 14
LYS
A
175 10LYSINE