Analysis of Ligand-Protein Contacts in PDB entry:
3DOG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 7 ligands in PDB entry 3DOG. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
160 11PHOSPHOTHREONINE
lig 2
TPO
C
160 11PHOSPHOTHREONINE
lig 3
NNN
A
299 26 A][1,3,5]TRIAZIN-2-YL]AMINO}BUTAN-1-OL
lig 4
SGM
B
1 6MONOTHIOGLYCEROL
lig 5
SGM
B
435 6MONOTHIOGLYCEROL
lig 6
NNN
C
299 26 A][1,3,5]TRIAZIN-2-YL]AMINO}BUTAN-1-OL
lig 7
SGM
D
1 6MONOTHIOGLYCEROL