Analysis of Ligand-Protein Contacts in PDB entry:
3DP8


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 3DP8. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NI
A
503 1NICKEL (II) ION
lig 2
ACT
A
504 4ACETATE ION
lig 3
ACT
A
505 4ACETATE ION
lig 4
ACT
A
506 4ACETATE ION
lig 5
ACT
A
507 4ACETATE ION
lig 6
SO4
A
508 5SULFATE ION
lig 7
CL
A
509 1CHLORIDE ION
lig 8
CL
A
510 1CHLORIDE ION
lig 9
HCT
A
511 13(2R)-BUTANE-1,2,4-TRICARBOXYLIC ACID
lig 10
GOL
A
512 6GLYCEROL
lig 11
GOL
A
513 6GLYCEROL
lig 12
GOL
A
514 6GLYCEROL
lig 13
GOL
A
515 6GLYCEROL
lig 14
NI
B
503 1NICKEL (II) ION
lig 15
ACT
B
504 4ACETATE ION
lig 16
ACT
B
505 4ACETATE ION
lig 17
ACT
B
506 4ACETATE ION
lig 18
ACT
B
507 4ACETATE ION
lig 19
CL
B
508 1CHLORIDE ION
lig 20
CL
B
509 1CHLORIDE ION
lig 21
CL
B
510 1CHLORIDE ION
lig 22
HCT
B
511 13(2R)-BUTANE-1,2,4-TRICARBOXYLIC ACID
lig 23
GOL
B
512 6GLYCEROL
lig 24
GOL
B
513 6GLYCEROL
lig 25
GOL
B
514 6GLYCEROL
lig 26
GOL
B
515 6GLYCEROL
lig 27
NI
C
503 1NICKEL (II) ION
lig 28
ACT
C
504 4ACETATE ION
lig 29
ACT
C
505 4ACETATE ION
lig 30
ACT
C
506 4ACETATE ION
lig 31
CL
C
507 1CHLORIDE ION
lig 32
CL
C
508 1CHLORIDE ION
lig 33
HCT
C
509 13(2R)-BUTANE-1,2,4-TRICARBOXYLIC ACID