Analysis of Ligand-Protein Contacts in PDB entry:
3DVL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 30 ligands in PDB entry 3DVL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
431 10PHOSPHOSERINE
lig 2
TPO
A
432 11PHOSPHOTHREONINE
lig 3
SEP
B
431 10PHOSPHOSERINE
lig 4
TPO
B
432 11PHOSPHOTHREONINE
lig 5
SEP
C
431 6PHOSPHOSERINE
lig 6
TPO
C
432 11PHOSPHOTHREONINE
lig 7
SEP
D
431 6PHOSPHOSERINE
lig 8
TPO
D
432 11PHOSPHOTHREONINE
lig 9
SEP
E
431 10PHOSPHOSERINE
lig 10
TPO
E
432 11PHOSPHOTHREONINE
lig 11
SEP
F
431 10PHOSPHOSERINE
lig 12
TPO
F
432 11PHOSPHOTHREONINE
lig 13
MG
A
801 1MAGNESIUM ION
lig 14
ATP
A
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 15
ATP
A
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 16
MG
B
802 1MAGNESIUM ION
lig 17
ATP
B
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 18
ATP
B
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 19
MG
C
803 1MAGNESIUM ION
lig 20
ATP
C
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 21
ATP
C
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 22
MG
D
804 1MAGNESIUM ION
lig 23
ATP
D
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 24
ATP
D
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 25
MG
E
805 1MAGNESIUM ION
lig 26
ATP
E
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 27
ATP
E
903 31ADENOSINE-5'-TRIPHOSPHATE
lig 28
MG
F
806 1MAGNESIUM ION
lig 29
ATP
F
901 31ADENOSINE-5'-TRIPHOSPHATE
lig 30
ATP
F
903 31ADENOSINE-5'-TRIPHOSPHATE