Analysis of Ligand-Protein Contacts in PDB entry:
3EF2


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 60 ligands in PDB entry 3EF2. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
OCS
A
215 9CYSTEINESULFONIC ACID
lig 2
OCS
B
215 9CYSTEINESULFONIC ACID
lig 3
OCS
C
215 9CYSTEINESULFONIC ACID
lig 4
OCS
D
215 9CYSTEINESULFONIC ACID
lig 5
GAL
E
1 12BETA-D-GALACTOPYRANOSE
lig 6
FUC
E
2 10ALPHA-L-FUCOPYRANOSE
lig 7
GLA
E
3 11ALPHA-D-GALACTOPYRANOSE
lig 8
GAL
F
1 12BETA-D-GALACTOPYRANOSE
lig 9
FUC
F
2 10ALPHA-L-FUCOPYRANOSE
lig 10
GLA
F
3 11ALPHA-D-GALACTOPYRANOSE
lig 11
GLA
G
1 12ALPHA-D-GALACTOPYRANOSE
lig 12
FUC
G
2 10ALPHA-L-FUCOPYRANOSE
lig 13
GLA
G
3 11ALPHA-D-GALACTOPYRANOSE
lig 14
GAL
H
1 12BETA-D-GALACTOPYRANOSE
lig 15
FUC
H
2 10ALPHA-L-FUCOPYRANOSE
lig 16
GLA
H
3 11ALPHA-D-GALACTOPYRANOSE
lig 17
GAL
I
1 12BETA-D-GALACTOPYRANOSE
lig 18
FUC
I
2 10ALPHA-L-FUCOPYRANOSE
lig 19
GLA
I
3 11ALPHA-D-GALACTOPYRANOSE
lig 20
GLA
J
1 12ALPHA-D-GALACTOPYRANOSE
lig 21
FUC
J
2 10ALPHA-L-FUCOPYRANOSE
lig 22
GLA
J
3 11ALPHA-D-GALACTOPYRANOSE
lig 23
GAL
K
1 12BETA-D-GALACTOPYRANOSE
lig 24
FUC
K
2 10ALPHA-L-FUCOPYRANOSE
lig 25
GLA
K
3 11ALPHA-D-GALACTOPYRANOSE
lig 26
GAL
L
1 12BETA-D-GALACTOPYRANOSE
lig 27
FUC
L
2 10ALPHA-L-FUCOPYRANOSE
lig 28
GLA
L
3 11ALPHA-D-GALACTOPYRANOSE
lig 29
GLA
M
1 12ALPHA-D-GALACTOPYRANOSE
lig 30
FUC
M
2 10ALPHA-L-FUCOPYRANOSE
lig 31
GLA
M
3 11ALPHA-D-GALACTOPYRANOSE
lig 32
GAL
N
1 12BETA-D-GALACTOPYRANOSE
lig 33
FUC
N
2 10ALPHA-L-FUCOPYRANOSE
lig 34
GLA
N
3 11ALPHA-D-GALACTOPYRANOSE
lig 35
GAL
O
1 12BETA-D-GALACTOPYRANOSE
lig 36
FUC
O
2 10ALPHA-L-FUCOPYRANOSE
lig 37
GLA
O
3 11ALPHA-D-GALACTOPYRANOSE
lig 38
GLA
P
1 12ALPHA-D-GALACTOPYRANOSE
lig 39
FUC
P
2 10ALPHA-L-FUCOPYRANOSE
lig 40
GLA
P
3 11ALPHA-D-GALACTOPYRANOSE
lig 41
CA
A
303 1CALCIUM ION
lig 42
CA
A
304 1CALCIUM ION
lig 43
CA
A
305 1CALCIUM ION
lig 44
ACT
A
306 4ACETATE ION
lig 45
CA
A
307 1CALCIUM ION
lig 46
CA
A
308 1CALCIUM ION
lig 47
ACT
A
309 4ACETATE ION
lig 48
CA
B
303 1CALCIUM ION
lig 49
CA
B
305 1CALCIUM ION
lig 50
CA
B
306 1CALCIUM ION
lig 51
CA
C
303 1CALCIUM ION
lig 52
CA
C
304 1CALCIUM ION
lig 53
CA
C
305 1CALCIUM ION
lig 54
ACT
C
306 4ACETATE ION
lig 55
CA
C
307 1CALCIUM ION
lig 56
CA
C
308 1CALCIUM ION
lig 57
CA
D
303 1CALCIUM ION
lig 58
ACT
D
304 4ACETATE ION
lig 59
CA
D
305 1CALCIUM ION
lig 60
CA
D
306 1CALCIUM ION