Analysis of Ligand-Protein Contacts in PDB entry:
3F4Z


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 43 ligands in PDB entry 3F4Z. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ACE
A
0 3ACETYL GROUP
lig 2
B3T
A
1 83-AMINO-2,3,5-TRIDEOXY-D-THREO-PENTONIC AC
lig 3
XCP
A
5 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 4
XPC
A
8 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 5
B3E
A
12 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 6
XCP
A
15 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 7
XCP
A
19 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 8
XPC
A
22 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 9
B3E
A
26 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 10
B3E
A
29 7(3S)-3-AMINOHEXANEDIOIC ACID
lig 11
XCP
A
33 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 12
XPC
A
36 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 13
XCP
B
5 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 14
XPC
B
8 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 15
B3E
B
12 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 16
XCP
B
15 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 17
XCP
B
19 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 18
XPC
B
22 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 19
B3E
B
26 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 20
B3E
B
29 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 21
XCP
B
33 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 22
XPC
B
36 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 23
ACE
C
0 3ACETYL GROUP
lig 24
B3T
C
1 83-AMINO-2,3,5-TRIDEOXY-D-THREO-PENTONIC AC
lig 25
XCP
C
5 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 26
XPC
C
8 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 27
B3E
C
12 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 28
XCP
C
15 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 29
XCP
C
19 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 30
XPC
C
22 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 31
B3E
C
26 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 32
B3E
C
29 10(3S)-3-AMINOHEXANEDIOIC ACID
lig 33
XCP
C
33 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 34
XPC
C
36 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 35
NH2
C
39 1AMINO GROUP
lig 36
MPD
A
40 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 37
MPD
A
41 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 38
MPD
A
42 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 39
MPD
A
43 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 40
MPD
B
40 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 41
MPD
B
41 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 42
MPD
B
42 8(4S)-2-METHYL-2,4-PENTANEDIOL
lig 43
MPD
C
40 8(4S)-2-METHYL-2,4-PENTANEDIOL