Analysis of Ligand-Protein Contacts in PDB entry:
3F87


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 53 ligands in PDB entry 3F87. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ACE
A
0 3ACETYL GROUP
lig 2
B3M
A
2 9(3R)-3-AMINO-5-(METHYLSULFANYL)PENTANOIC A
lig 3
BIL
A
5 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 4
B3L
A
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 5
BIL
A
12 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 6
B3L
A
16 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 7
BIL
A
19 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 8
B3L
A
23 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 9
BIL
A
26 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 10
B3L
A
30 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 11
HMR
A
33 13BETA-HOMOARGININE
lig 12
ACE
B
0 3ACETYL GROUP
lig 13
B3M
B
2 9(3R)-3-AMINO-5-(METHYLSULFANYL)PENTANOIC A
lig 14
BIL
B
5 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 15
B3L
B
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 16
BIL
B
12 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 17
B3L
B
16 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 18
BIL
B
19 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 19
B3L
B
23 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 20
BIL
B
26 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 21
B3L
B
30 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 22
HMR
B
33 13BETA-HOMOARGININE
lig 23
ACE
C
0 3ACETYL GROUP
lig 24
B3M
C
2 9(3R)-3-AMINO-5-(METHYLSULFANYL)PENTANOIC A
lig 25
BIL
C
5 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 26
B3L
C
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 27
BIL
C
12 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 28
B3L
C
16 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 29
BIL
C
19 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 30
B3L
C
23 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 31
BIL
C
26 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 32
B3L
C
30 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 33
HMR
C
33 12BETA-HOMOARGININE
lig 34
ACE
D
0 3ACETYL GROUP
lig 35
B3M
D
2 8(3R)-3-AMINO-5-(METHYLSULFANYL)PENTANOIC A
lig 36
BIL
D
5 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 37
B3L
D
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 38
BIL
D
12 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 39
B3L
D
16 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 40
BIL
D
19 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 41
B3L
D
23 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 42
BIL
D
26 9(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
lig 43
B3L
D
30 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 44
HMR
D
33 13BETA-HOMOARGININE
lig 45
IOD
A
34 1IODIDE ION
lig 46
IOD
A
35 1IODIDE ION
lig 47
IOD
A
36 1IODIDE ION
lig 48
IOD
A
37 1IODIDE ION
lig 49
IOD
A
38 1IODIDE ION
lig 50
IOD
B
34 1IODIDE ION
lig 51
IOD
B
35 1IODIDE ION
lig 52
IOD
C
34 1IODIDE ION
lig 53
IOD
C
35 1IODIDE ION