Analysis of Ligand-Protein Contacts in PDB entry:
3FDE


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 37 ligands in PDB entry 3FDE. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
5CM
D
407 205-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHAT
lig 2
5CM
C
407 205-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHAT
lig 3
EDO
A
629 41,2-ETHANEDIOL
lig 4
EDO
A
630 41,2-ETHANEDIOL
lig 5
EDO
A
631 41,2-ETHANEDIOL
lig 6
EDO
A
632 41,2-ETHANEDIOL
lig 7
EDO
A
633 41,2-ETHANEDIOL
lig 8
EDO
A
634 41,2-ETHANEDIOL
lig 9
EDO
A
635 41,2-ETHANEDIOL
lig 10
EDO
A
636 41,2-ETHANEDIOL
lig 11
NA
A
637 1SODIUM ION
lig 12
UNL
A
638 2UNKNOWN LIGAND
lig 13
UNL
A
654 2UNKNOWN LIGAND
lig 14
EDO
B
629 41,2-ETHANEDIOL
lig 15
EDO
B
630 41,2-ETHANEDIOL
lig 16
EDO
B
631 41,2-ETHANEDIOL
lig 17
EDO
B
632 41,2-ETHANEDIOL
lig 18
EDO
B
633 41,2-ETHANEDIOL
lig 19
NA
B
634 1SODIUM ION
lig 20
UNL
B
655 5UNKNOWN LIGAND
lig 21
UNL
B
322 3UNKNOWN LIGAND
lig 22
UNL
B
215 2UNKNOWN LIGAND
lig 23
UNL
B
636 2UNKNOWN LIGAND
lig 24
EDO
D
502 41,2-ETHANEDIOL
lig 25
EDO
E
501 41,2-ETHANEDIOL
lig 26
EDO
E
503 41,2-ETHANEDIOL
lig 27
NA
E
504 1SODIUM ION
lig 28
EDO
C
505 41,2-ETHANEDIOL
lig 29
UNL
C
359 2UNKNOWN LIGAND
lig 30
UNL
C
456 2UNKNOWN LIGAND
lig 31
UNL
C
637 2UNKNOWN LIGAND
lig 32
EDO
F
506 41,2-ETHANEDIOL
lig 33
EDO
F
509 41,2-ETHANEDIOL
lig 34
EDO
F
510 41,2-ETHANEDIOL
lig 35
EDO
F
511 41,2-ETHANEDIOL
lig 36
EDO
F
513 41,2-ETHANEDIOL
lig 37
NA
F
503 1SODIUM ION