Analysis of Ligand-Protein Contacts in PDB entry:
3FDM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 3FDM. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
XPC
D
1 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 2
XCP
D
3 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 3
XCP
D
5 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 4
XCP
D
7 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 5
B3L
D
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 6
NH2
D
16 1AMINO GROUP
lig 7
XPC
E
1 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 8
XCP
E
3 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 9
XCP
E
5 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 10
XCP
E
7 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 11
B3L
E
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 12
NH2
E
16 1AMINO GROUP
lig 13
ACE
F
0 3ACETYL GROUP
lig 14
XPC
F
1 8(3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC AC
lig 15
XCP
F
3 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 16
XCP
F
5 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 17
XCP
F
7 8(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID
lig 18
B3L
F
9 9(3S)-3-AMINO-5-METHYLHEXANOIC ACID
lig 19
NH2
F
16 1AMINO GROUP
lig 20
EDO
A
210 41,2-ETHANEDIOL
lig 21
EDO
A
211 41,2-ETHANEDIOL
lig 22
EDO
A
212 41,2-ETHANEDIOL
lig 23
EDO
A
213 41,2-ETHANEDIOL
lig 24
EDO
A
214 41,2-ETHANEDIOL
lig 25
EDO
A
215 41,2-ETHANEDIOL
lig 26
EDO
A
216 41,2-ETHANEDIOL
lig 27
EDO
B
210 41,2-ETHANEDIOL
lig 28
EDO
B
211 41,2-ETHANEDIOL
lig 29
EDO
B
212 41,2-ETHANEDIOL
lig 30
EDO
B
213 41,2-ETHANEDIOL