Analysis of Ligand-Protein Contacts in PDB entry:
3GDN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 25 ligands in PDB entry 3GDN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
FUC
D
2 10ALPHA-L-FUCOPYRANOSE
lig 6
NAG
D
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 10
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 11
FUC
E
5 10ALPHA-L-FUCOPYRANOSE
lig 12
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 16
FAD
A
522 53FLAVIN-ADENINE DINUCLEOTIDE
lig 17
NAG
A
523 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
HBX
A
530 8BENZALDEHYDE
lig 19
MXN
A
531 10(2R)-HYDROXY(PHENYL)ETHANENITRILE
lig 20
MXN
A
532 10(2R)-HYDROXY(PHENYL)ETHANENITRILE
lig 21
FAD
B
522 53FLAVIN-ADENINE DINUCLEOTIDE
lig 22
NAG
B
532 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
HBX
B
533 8BENZALDEHYDE
lig 24
MXN
B
534 10(2R)-HYDROXY(PHENYL)ETHANENITRILE
lig 25
MXN
B
535 10(2R)-HYDROXY(PHENYL)ETHANENITRILE