Analysis of Ligand-Protein Contacts in PDB entry:
3GSD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 50 ligands in PDB entry 3GSD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NA
A
120 1SODIUM ION
lig 2
NA
A
121 1SODIUM ION
lig 3
NA
A
122 1SODIUM ION
lig 4
PEG
A
123 7DI(HYDROXYETHYL)ETHER
lig 5
EPE
A
124 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 6
NA
B
120 1SODIUM ION
lig 7
NA
B
121 1SODIUM ION
lig 8
PEG
B
122 7DI(HYDROXYETHYL)ETHER
lig 9
EPE
B
123 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 10
NA
C
120 1SODIUM ION
lig 11
PEG
C
121 7DI(HYDROXYETHYL)ETHER
lig 12
EDO
C
122 41,2-ETHANEDIOL
lig 13
EPE
C
123 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 14
NA
D
120 1SODIUM ION
lig 15
NA
D
121 1SODIUM ION
lig 16
PEG
D
122 7DI(HYDROXYETHYL)ETHER
lig 17
EPE
D
123 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 18
NA
E
120 1SODIUM ION
lig 19
PEG
E
121 7DI(HYDROXYETHYL)ETHER
lig 20
EPE
E
122 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 21
NA
F
120 1SODIUM ION
lig 22
NA
F
121 1SODIUM ION
lig 23
NA
F
122 1SODIUM ION
lig 24
PEG
F
123 7DI(HYDROXYETHYL)ETHER
lig 25
EDO
F
124 41,2-ETHANEDIOL
lig 26
EPE
F
125 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 27
NA
G
120 1SODIUM ION
lig 28
NA
G
121 1SODIUM ION
lig 29
PEG
G
122 7DI(HYDROXYETHYL)ETHER
lig 30
EPE
G
123 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 31
PEG
H
120 7DI(HYDROXYETHYL)ETHER
lig 32
EDO
H
121 41,2-ETHANEDIOL
lig 33
EPE
H
122 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 34
NA
I
120 1SODIUM ION
lig 35
NA
I
121 1SODIUM ION
lig 36
NA
I
122 1SODIUM ION
lig 37
PEG
I
123 7DI(HYDROXYETHYL)ETHER
lig 38
EPE
I
124 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 39
NA
J
120 1SODIUM ION
lig 40
PEG
J
121 7DI(HYDROXYETHYL)ETHER
lig 41
EPE
J
122 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 42
NA
K
120 1SODIUM ION
lig 43
PEG
K
121 7DI(HYDROXYETHYL)ETHER
lig 44
EPE
K
122 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 45
NA
L
120 1SODIUM ION
lig 46
NA
L
121 1SODIUM ION
lig 47
NA
L
122 1SODIUM ION
lig 48
PEG
L
123 7DI(HYDROXYETHYL)ETHER
lig 49
EPE
L
124 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF
lig 50
EPE
L
125 154-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULF