Analysis of Ligand-Protein Contacts in PDB entry:
3KDN


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 3KDN. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
KCX
A
189 12LYSINE NZ-CARBOXYLIC ACID
lig 2
KCX
B
189 12LYSINE NZ-CARBOXYLIC ACID
lig 3
KCX
C
189 12LYSINE NZ-CARBOXYLIC ACID
lig 4
KCX
D
189 12LYSINE NZ-CARBOXYLIC ACID
lig 5
KCX
E
189 12LYSINE NZ-CARBOXYLIC ACID
lig 6
KCX
F
189 12LYSINE NZ-CARBOXYLIC ACID
lig 7
KCX
G
189 12LYSINE NZ-CARBOXYLIC ACID
lig 8
KCX
H
189 12LYSINE NZ-CARBOXYLIC ACID
lig 9
KCX
I
189 12LYSINE NZ-CARBOXYLIC ACID
lig 10
KCX
J
189 12LYSINE NZ-CARBOXYLIC ACID
lig 11
MG
A
500 1MAGNESIUM ION
lig 12
CAP
A
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 13
MG
B
500 1MAGNESIUM ION
lig 14
CAP
B
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 15
MG
C
500 1MAGNESIUM ION
lig 16
CAP
C
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 17
MG
D
500 1MAGNESIUM ION
lig 18
CAP
D
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 19
MG
E
500 1MAGNESIUM ION
lig 20
CAP
E
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 21
MG
F
500 1MAGNESIUM ION
lig 22
CAP
F
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 23
MG
G
500 1MAGNESIUM ION
lig 24
CAP
G
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 25
MG
H
500 1MAGNESIUM ION
lig 26
CAP
H
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 27
MG
I
500 1MAGNESIUM ION
lig 28
CAP
I
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 29
MG
J
500 1MAGNESIUM ION
lig 30
CAP
J
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE