Analysis of Ligand-Protein Contacts in PDB entry:
3KRQ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 25 ligands in PDB entry 3KRQ. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
MAN
B
3 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 8
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
MAN
D
3 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NDG
E
2 142-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE
lig 13
HEM
A
655 43PROTOPORPHYRIN IX CONTAINING FE
lig 14
CA
A
656 1CALCIUM ION
lig 15
IOD
A
610 1IODIDE ION
lig 16
IOD
A
611 1IODIDE ION
lig 17
IOD
A
612 1IODIDE ION
lig 18
IOD
A
613 1IODIDE ION
lig 19
IOD
A
614 1IODIDE ION
lig 20
IOD
A
615 1IODIDE ION
lig 21
IOD
A
616 1IODIDE ION
lig 22
3TR
A
607 63-AMINO-1,2,4-TRIAZOLE
lig 23
3TR
A
608 63-AMINO-1,2,4-TRIAZOLE
lig 24
MRD
A
609 8(4R)-2-METHYLPENTANE-2,4-DIOL
lig 25
PEG
A
6071 7DI(HYDROXYETHYL)ETHER