Analysis of Ligand-Protein Contacts in PDB entry:
3L25


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 38 ligands in PDB entry 3L25. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
MG
A
1 1MAGNESIUM ION
lig 2
CL
A
2 1CHLORIDE ION
lig 3
NA
A
10 1SODIUM ION
lig 4
GOL
A
341 6GLYCEROL
lig 5
FMT
A
3 3FORMIC ACID
lig 6
FMT
A
11 3FORMIC ACID
lig 7
FMT
A
12 3FORMIC ACID
lig 8
FMT
A
16 3FORMIC ACID
lig 9
FMT
A
19 3FORMIC ACID
lig 10
CL
B
5 1CHLORIDE ION
lig 11
NA
B
6 1SODIUM ION
lig 12
NA
B
13 1SODIUM ION
lig 13
FMT
B
10 3FORMIC ACID
lig 14
FMT
B
341 3FORMIC ACID
lig 15
FMT
B
17 3FORMIC ACID
lig 16
FMT
B
18 3FORMIC ACID
lig 17
FMT
B
22 3FORMIC ACID
lig 18
FMT
B
23 3FORMIC ACID
lig 19
FMT
B
25 3FORMIC ACID
lig 20
NA
C
9 1SODIUM ION
lig 21
NA
C
10 1SODIUM ION
lig 22
NA
C
12 1SODIUM ION
lig 23
FMT
C
11 3FORMIC ACID
lig 24
FMT
C
24 3FORMIC ACID
lig 25
CL
D
4 1CHLORIDE ION
lig 26
NA
D
8 1SODIUM ION
lig 27
FMT
D
2 3FORMIC ACID
lig 28
FMT
D
341 3FORMIC ACID
lig 29
FMT
D
6 3FORMIC ACID
lig 30
FMT
D
20 3FORMIC ACID
lig 31
FMT
D
21 3FORMIC ACID
lig 32
CL
E
3 1CHLORIDE ION
lig 33
FMT
E
7 3FORMIC ACID
lig 34
FMT
E
8 3FORMIC ACID
lig 35
FMT
E
14 3FORMIC ACID
lig 36
FMT
E
15 3FORMIC ACID
lig 37
NA
F
11 1SODIUM ION
lig 38
FMT
F
9 3FORMIC ACID