Analysis of Ligand-Protein Contacts in PDB entry:
3M8Y


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 26 ligands in PDB entry 3M8Y. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
TPO
A
85 11PHOSPHOTHREONINE
lig 2
TPO
B
85 11PHOSPHOTHREONINE
lig 3
TPO
C
85 11PHOSPHOTHREONINE
lig 4
MN
A
395 1MANGANESE (II) ION
lig 5
MN
A
396 1MANGANESE (II) ION
lig 6
MN
A
397 1MANGANESE (II) ION
lig 7
ACT
A
398 4ACETATE ION
lig 8
ACT
A
399 4ACETATE ION
lig 9
GOL
A
400 6GLYCEROL
lig 10
GOL
A
401 6GLYCEROL
lig 11
GOL
A
402 6GLYCEROL
lig 12
TRS
A
403 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 13
MN
B
395 1MANGANESE (II) ION
lig 14
MN
B
396 1MANGANESE (II) ION
lig 15
MN
B
397 1MANGANESE (II) ION
lig 16
MN
B
398 1MANGANESE (II) ION
lig 17
ACT
B
399 4ACETATE ION
lig 18
ACT
B
400 4ACETATE ION
lig 19
GOL
B
401 6GLYCEROL
lig 20
GOL
B
402 6GLYCEROL
lig 21
GOL
B
403 6GLYCEROL
lig 22
MN
C
395 1MANGANESE (II) ION
lig 23
MN
C
396 1MANGANESE (II) ION
lig 24
MN
C
397 1MANGANESE (II) ION
lig 25
ACT
C
398 4ACETATE ION
lig 26
TRS
C
399 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL