Analysis of Ligand-Protein Contacts in PDB entry:
3MDO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 3MDO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CA
A
389 1CALCIUM ION
lig 2
CA
A
390 1CALCIUM ION
lig 3
CA
A
391 1CALCIUM ION
lig 4
CA
A
392 1CALCIUM ION
lig 5
CL
A
393 1CHLORIDE ION
lig 6
CL
A
394 1CHLORIDE ION
lig 7
ACT
A
395 4ACETATE ION
lig 8
PEG
A
396 7DI(HYDROXYETHYL)ETHER
lig 9
PEG
A
397 7DI(HYDROXYETHYL)ETHER
lig 10
PEG
A
398 7DI(HYDROXYETHYL)ETHER
lig 11
PEG
A
399 7DI(HYDROXYETHYL)ETHER
lig 12
PEG
A
400 7DI(HYDROXYETHYL)ETHER
lig 13
PEG
A
401 7DI(HYDROXYETHYL)ETHER
lig 14
PGE
A
402 10TRIETHYLENE GLYCOL
lig 15
PGE
A
403 10TRIETHYLENE GLYCOL
lig 16
P6G
A
404 19HEXAETHYLENE GLYCOL
lig 17
CA
B
389 1CALCIUM ION
lig 18
CA
B
390 1CALCIUM ION
lig 19
CA
B
391 1CALCIUM ION
lig 20
CL
B
392 1CHLORIDE ION
lig 21
CL
B
393 1CHLORIDE ION
lig 22
CAC
B
394 5CACODYLATE ION
lig 23
ACT
B
395 4ACETATE ION
lig 24
PEG
B
396 7DI(HYDROXYETHYL)ETHER
lig 25
PEG
B
397 7DI(HYDROXYETHYL)ETHER
lig 26
PEG
B
398 7DI(HYDROXYETHYL)ETHER
lig 27
PEG
B
399 7DI(HYDROXYETHYL)ETHER
lig 28
PEG
B
400 7DI(HYDROXYETHYL)ETHER
lig 29
PGE
B
401 10TRIETHYLENE GLYCOL
lig 30
PGE
B
402 10TRIETHYLENE GLYCOL
lig 31
PGE
B
403 10TRIETHYLENE GLYCOL
lig 32
PG4
B
404 13TETRAETHYLENE GLYCOL
lig 33
PG4
B
405 13TETRAETHYLENE GLYCOL