Analysis of Ligand-Protein Contacts in PDB entry:
3MK1


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 17 ligands in PDB entry 3MK1. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
92 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
ZN
A
901 1ZINC ION
lig 7
ZN
A
902 1ZINC ION
lig 8
ZN
A
903 1ZINC ION
lig 9
CA
A
905 1CALCIUM ION
lig 10
NPO
A
911 10P-NITROPHENOL
lig 11
NPO
A
912 10P-NITROPHENOL
lig 12
NPO
A
913 10P-NITROPHENOL
lig 13
PO4
A
950 5PHOSPHATE ION
lig 14
ACT
A
933 4ACETATE ION
lig 15
ACT
A
934 4ACETATE ION
lig 16
ACT
A
935 4ACETATE ION
lig 17
NA
A
941 1SODIUM ION