Analysis of Ligand-Protein Contacts in PDB entry:
3NXD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 21 ligands in PDB entry 3NXD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
BGC
F
1 12BETA-D-GLUCOPYRANOSE
lig 2
GAL
F
2 11BETA-D-GALACTOPYRANOSE
lig 3
NAG
F
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
GAL
F
4 11BETA-D-GALACTOPYRANOSE
lig 5
SIA
F
5 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 6
BGC
G
1 12BETA-D-GLUCOPYRANOSE
lig 7
GAL
G
2 11BETA-D-GALACTOPYRANOSE
lig 8
NAG
G
3 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
GAL
G
4 11BETA-D-GALACTOPYRANOSE
lig 10
SIA
G
5 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 11
GOL
C
290 6GLYCEROL
lig 12
EDO
C
291 41,2-ETHANEDIOL
lig 13
GOL
B
290 6GLYCEROL
lig 14
GOL
A
4 6GLYCEROL
lig 15
EDO
A
5 41,2-ETHANEDIOL
lig 16
EDO
A
6 41,2-ETHANEDIOL
lig 17
GOL
D
2 6GLYCEROL
lig 18
EDO
D
290 41,2-ETHANEDIOL
lig 19
GOL
E
3 6GLYCEROL
lig 20
EDO
E
290 41,2-ETHANEDIOL
lig 21
EDO
E
4 41,2-ETHANEDIOL