Analysis of Ligand-Protein Contacts in PDB entry:
3OMA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 41 ligands in PDB entry 3OMA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OH
A
706 1HYDROXIDE ION
lig 2
DMU
A
1005 22DECYL-BETA-D-MALTOPYRANOSIDE
lig 3
DMU
A
7 22DECYL-BETA-D-MALTOPYRANOSIDE
lig 4
TRD
A
1009 7TRIDECANE
lig 5
TRD
A
1013 7TRIDECANE
lig 6
TRD
A
1015 7TRIDECANE
lig 7
HEA
A
1 60HEME-A
lig 8
HEA
A
2 60HEME-A
lig 9
TRD
A
552 13TRIDECANE
lig 10
TRD
A
3 13TRIDECANE
lig 11
CU
A
5 1COPPER (II) ION
lig 12
MG
A
6 1MAGNESIUM ION
lig 13
CA
A
553 1CALCIUM ION
lig 14
DMU
B
1 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 15
DMU
B
2 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 16
DMU
B
3 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 17
DMU
B
6 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 18
TRD
B
4 9TRIDECANE
lig 19
HTH
B
286 10(2S,3R)-HEPTANE-1,2,3-TRIOL
lig 20
CU
B
287 1COPPER (II) ION
lig 21
CU1
B
288 1COPPER (I) ION
lig 22
CD
B
8 1CADMIUM ION
lig 23
CD
B
9 1CADMIUM ION
lig 24
OH
C
706 1HYDROXIDE ION
lig 25
DMU
C
10 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 26
DMU
C
5 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 27
DMU
C
9 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 28
HEA
C
1 60HEME-A
lig 29
HEA
C
2 60HEME-A
lig 30
TRD
C
552 13TRIDECANE
lig 31
CU
C
553 1COPPER (II) ION
lig 32
MG
C
6 1MAGNESIUM ION
lig 33
CA
C
7 1CALCIUM ION
lig 34
DMU
D
4 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 35
DMU
D
8 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 36
TRD
D
3 13TRIDECANE
lig 37
TRD
D
14 7TRIDECANE
lig 38
CU
D
286 1COPPER (II) ION
lig 39
CU1
D
287 1COPPER (I) ION
lig 40
CD
D
288 1CADMIUM ION
lig 41
CD
D
9 1CADMIUM ION