Analysis of Ligand-Protein Contacts in PDB entry:
3OMI


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 43 ligands in PDB entry 3OMI. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
OH
A
601 1HYDROXIDE ION
lig 2
DMU
A
602 22DECYL-BETA-D-MALTOPYRANOSIDE
lig 3
DMU
A
603 22DECYL-BETA-D-MALTOPYRANOSIDE
lig 4
TRD
A
604 7TRIDECANE
lig 5
TRD
A
605 7TRIDECANE
lig 6
TRD
A
606 7TRIDECANE
lig 7
HEA
A
607 60HEME-A
lig 8
HEA
A
608 60HEME-A
lig 9
TRD
A
609 13TRIDECANE
lig 10
TRD
A
610 13TRIDECANE
lig 11
CU
A
611 1COPPER (II) ION
lig 12
MG
A
612 1MAGNESIUM ION
lig 13
CA
A
613 1CALCIUM ION
lig 14
CL
A
614 1CHLORIDE ION
lig 15
DMU
B
301 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 16
DMU
B
302 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 17
DMU
B
303 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 18
DMU
B
304 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 19
TRD
B
305 9TRIDECANE
lig 20
HTH
B
306 10(2S,3R)-HEPTANE-1,2,3-TRIOL
lig 21
CU
B
307 1COPPER (II) ION
lig 22
CU1
B
308 1COPPER (I) ION
lig 23
CD
B
309 1CADMIUM ION
lig 24
CD
B
310 1CADMIUM ION
lig 25
OH
C
601 1HYDROXIDE ION
lig 26
DMU
C
602 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 27
DMU
C
603 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 28
DMU
C
604 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 29
HEA
C
605 60HEME-A
lig 30
HEA
C
606 60HEME-A
lig 31
TRD
C
607 11TRIDECANE
lig 32
CU
C
608 1COPPER (II) ION
lig 33
MG
C
609 1MAGNESIUM ION
lig 34
CA
C
610 1CALCIUM ION
lig 35
CL
C
611 1CHLORIDE ION
lig 36
DMU
D
301 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 37
DMU
D
302 23DECYL-BETA-D-MALTOPYRANOSIDE
lig 38
TRD
D
303 13TRIDECANE
lig 39
TRD
D
304 7TRIDECANE
lig 40
CU
D
305 1COPPER (II) ION
lig 41
CU1
D
306 1COPPER (I) ION
lig 42
CD
D
307 1CADMIUM ION
lig 43
CD
D
308 1CADMIUM ION